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Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
THCA rs7845886 chr8:9282177 T/C SGK223 chr8:8175258-8244008:- 0.36 6.11 2.07E-9 Box Plot
THCA rs7846248 chr8:11794049 T/A SGK223 chr8:8175258-8244008:- -0.39 -7.19 2.59E-12 Box Plot
THCA rs7847663 chr9:100544868 C/T BMPR1A chr10:88516358-88692595:+ -0.24 -6.06 2.78E-9 Box Plot
THCA rs7847663 chr9:100544868 C/T CLDN2 chrX:106143394-106174091:+ 0.27 6.15 1.61E-9 Box Plot
THCA rs7847663 chr9:100544868 C/T EML5 chr14:89078775-89259096:- 0.29 6.67 7.13E-11 Box Plot
THCA rs7847663 chr9:100544868 C/T EPDR1 chr7:37723446-37991543:+ 0.32 7.08 5.03E-12 Box Plot
THCA rs7847663 chr9:100544868 C/T GGT5 chr22:24615622-24641110:- 0.26 5.99 4.23E-9 Box Plot
THCA rs7847663 chr9:100544868 C/T LRRC42 chr1:54411750-54433841:+ -0.24 -6.16 1.56E-9 Box Plot
THCA rs7847663 chr9:100544868 C/T NKX6-1 chr4:85413140-85419603:- 0.51 8.83 1.94E-17 Box Plot
THCA rs7847663 chr9:100544868 C/T PLCE1 chr10:95790569-96092580:+ 0.27 6.19 1.32E-9 Box Plot
THCA rs7848973 chr9:100588839 A/G KRT27 chr17:38933060-38938786:- -0.21 -5.98 4.5E-9 Box Plot
THCA rs7848973 chr9:100588839 A/G NKX6-1 chr4:85413140-85419603:- 0.42 6.87 1.95E-11 Box Plot
THCA rs78497455 chr3:96784709 A/G PRPF31 chr19:54618790-54635150:+ -0.38 -5.99 4.08E-9 Box Plot
THCA rs7850258 chr9:100549013 C/T BMPR1A chr10:88516358-88692595:+ 0.25 6.28 7.76E-10 Box Plot
THCA rs7850258 chr9:100549013 C/T EML5 chr14:89078775-89259096:- -0.31 -7.09 4.74E-12 Box Plot